Package: openCR 2.2.7

openCR: Open Population Capture-Recapture

Non-spatial and spatial open-population capture-recapture analysis.

Authors:Murray Efford [aut, cre]

openCR_2.2.7.tar.gz
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openCR_2.2.7.tgz(r-4.4-x86_64)openCR_2.2.7.tgz(r-4.4-arm64)openCR_2.2.7.tgz(r-4.3-x86_64)openCR_2.2.7.tgz(r-4.3-arm64)
openCR_2.2.7.tar.gz(r-4.5-noble)openCR_2.2.7.tar.gz(r-4.4-noble)
openCR_2.2.7.tgz(r-4.4-emscripten)openCR_2.2.7.tgz(r-4.3-emscripten)
openCR.pdf |openCR.html✨
openCR/json (API)
NEWS

# Install 'openCR' in R:
install.packages('openCR', repos = c('https://murrayefford.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/murrayefford/opencr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

5.92 score 3 stars 46 scripts 406 downloads 3 mentions 39 exports 35 dependencies

Last updated 14 days agofrom:afb11e7f6f. Checks:OK: 3 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 23 2024
R-4.5-win-x86_64OKOct 23 2024
R-4.5-linux-x86_64OKOct 23 2024
R-4.4-win-x86_64NOTEOct 23 2024
R-4.4-mac-x86_64NOTEOct 23 2024
R-4.4-mac-aarch64NOTEOct 23 2024
R-4.3-win-x86_64NOTEOct 23 2024
R-4.3-mac-x86_64NOTEOct 23 2024
R-4.3-mac-aarch64NOTEOct 23 2024

Exports:age.matrixbd.arrayclassMembershipcloned.fitcumMovedkernelexpected.dextractFocalgkernelJS.countsJS.directm.arraymake.kernelmake.tablematchscalemoving.fitopenCR.designopenCR.esaopenCR.fitopenCR.pdotopenCRlistpar.openCR.fitpkernelprimarysessionsproportionInPolygonqkernelread.inprunsim.nonspatialrunsim.RMarkrunsim.spatialsecondarysessionssim.nonspatialsqueezestratastrata<-stratifysumsimsucare.cjsunsqueeze

Dependencies:abindBHclassclassIntcliDBIe1071glueKernSmoothlatticelifecyclemagrittrMASSMatrixmgcvmvtnormnlmeplyrproxyrasterRcppRcppEigenRcppNumericalRcppParallelrlangs2secrsfspstringistringrterraunitsvctrswk

openCR 2.2 - open population capture--recapture

Murray Efford

Rendered fromopenCR-vignette.Rmdusingknitr::rmarkdownon Oct 23 2024.

Last update: 2024-05-23
Started: 2021-11-14

Readme and manuals

Help Manual

Help pageTopics
Open Population Capture-Recapture ModelsopenCR-package openCR
Session-specific Agesage.matrix
Compare openCR ModelsAIC.openCR AIC.openCRlist logLik.openCR
Class Membership Probability for Mixture ModelsclassMembership classMembership.openCR
Cloning to Evaluate Identifiabilitycloned.fit
Array of Parameter Estimatescollate collate.openCR collate.openCRlist
Probability Distribution After MovementcumMove proportionInPolygon
Derived Parameters From openCR Modelsderived.openCR derived.openCRlist openCR.esa openCR.pdot
DippersdipperCH
Expected Distance Movedexpected.d
Kielder Field VolesfieldvoleCH
Gonodontis MothsgonodontisCH
Internal Functionscyclic.fit PCH1 PCH1secr pradelloglik prwi prwisecr
Summarise Non-spatial Open-population Databd.array JS.counts m.array
Jolly-Seber EstimatesJS.direct
Plot Likelihood SurfaceLLsurface LLsurface.openCR
Discrete Movement Kernelmake.kernel plot.kernel summary.kernel
Tabulate Estimates From Multiple Modelsmake.table
Create Default Design DatamakeNewData makeNewData.openCR
Match Kernelmatchscale
Patuxent Meadow VolesmicrotusCH microtusFCH microtusFMCH microtusMCH microtusRDCH
Data Manipulationprimarysessions secondarysessions
Averaging of OpenCR Models Using Akaike's Information CriterionmodelAverage modelAverage.openCR modelAverage.openCRlist
List of Movement ModelsMovement models
Moving Window FunctionsextractFocal moving.fit
Defunct Functions in Package 'openCR'openCR-defunct openCR.make.newdata plotKernel
Deprecated Functions in Package 'openCR'openCR-deprecated
Design Data for Open population ModelsopenCR.design
Fit Open Population Capture-Recapture ModelopenCR.fit
Bundle openCR ModelsopenCRlist [.openCRlist
Fit Multiple openCR Modelspar.openCR.fit
Kernel Distribution Functionsdkernel gkernel pkernel qkernel
Plot Derived Estimatesplot.derivedopenCR
Plot Estimatesplot.openCR
Orongorongo Valley Brushtail PossumsFebpossumCH
openCR Model Predictionspredict.openCR predict.openCRlist
Print Method for Derived Estimatesprint.derivedopenCR
Print or Summarise openCR Objectprint.openCR summary.openCR
Import Data from RMark Input Formatread.inp
Reverse Primary Sessionsrev.capthist
Simulate Capture Historiesrunsim.nonspatial runsim.RMark runsim.spatial sim.nonspatial sumsims
Unique Capture Historiessqueeze unsqueeze
Stratum namesstrata strata<-
Stratify Capture-Recapture Datastratify
Goodness-of-fit tests for the Cormack-Jolly-Seber modelucare.cjs