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      "table": false,
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      "name": "microtusFMCH",
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        "openCR"
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      "topics": [
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      "title": "Internal Functions",
      "topics": [
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        "PCH1",
        "PCH1secr",
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        "prwi",
        "prwisecr"
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      "title": "Jolly-Seber Estimates",
      "topics": [
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      "page": "LLsurface",
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      "title": "Plot Derived Estimates",
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      "page": "print.derivedopenCR",
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      "page": "simulate",
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      "source": "openCR-vignette.Rmd",
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      "title": "openCR 2.2 - open population capture--recapture",
      "author": "Murray Efford",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Outline",
        "Model types",
        "Data",
        "Model specification and fitting",
        "Parameterization",
        "Features and limitations",
        "Dipper example",
        "A brief survey of open population capture--recapture models",
        "CJS vs JS",
        "Parameterization of recruitment in JSSA models",
        "Conditional (PLB) vs full likelihood JSSA",
        "Sufficient statistics vs capture histories",
        "Robust design",
        "Spatial vs nonspatial",
        "Home-range shifts between primary sessions",
        "Data structure and input",
        "Stratification",
        "Non-spatial openCR models",
        "Parameters and model types",
        "Non-spatial models using sufficient statistics",
        "Spatial openCR models",
        "Model formulae",
        "Built-in predictors",
        "User-provided covariates",
        "More on modelling",
        "Closed populations",
        "Finite mixtures",
        "Age",
        "Sampling intervals",
        "Custom design data",
        "Transience",
        "Factor coding",
        "Mean of a parameter across levels of a factor",
        "Movement models",
        "Movement kernels",
        "Zero-inflated kernels",
        "User-defined kernel",
        "Sparse kernels",
        "Edge effects",
        "Plotting and summary",
        "Warnings",
        "Settlement models",
        "Derived parameters",
        "Simulating open-population data",
        "Troubleshooting",
        "Nonidentifiability",
        "Failure of numerical maximization",
        "Starting values",
        "Boundary estimates",
        "Alternative algorithms",
        "Step into infeasible parameter space",
        "Number of iterations",
        "Factor coding",
        "Speed",
        "Extras",
        "Sampling variance warning",
        "Example datasets",
        "Testing assumptions",
        "Limitations of openCR",
        "Differences from secr",
        "Relationship to other software",
        "References",
        "Appendix 1. Code for figures."
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      "created": "2021-11-14 07:51:36",
      "modified": "2024-05-23 08:12:57",
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