Introductory example | Linear habitat masks | Input from a polyline shapefile | Input from a SpatialLinesDataFrame | Input from a dataframe of coordinates | Input from a text file of coordinates | Network distance | Detector layouts | Simulating detection data | Model fitting | Advanced topics | Population size and effective sampling area | Linear habitat covariates | Discontinuities and traversable non-habitat | Linear home-range size | Evaluating study designs | Limitations, tips and troubleshooting | References | Appendix. Extended water vole example.
Package: secrlinear 1.2.5
secrlinear: Spatially Explicit Capture-Recapture for Linear Habitats
Tools for spatially explicit capture-recapture analysis of animal populations in linear habitats, extending package 'secr'.
Authors:
secrlinear_1.2.5.tar.gz
secrlinear_1.2.5.zip(r-4.7)secrlinear_1.2.5.zip(r-4.6)secrlinear_1.2.5.zip(r-4.5)
secrlinear_1.2.5.tgz(r-4.6-any)secrlinear_1.2.5.tgz(r-4.5-any)
secrlinear_1.2.5.tar.gz(r-4.7-any)secrlinear_1.2.5.tar.gz(r-4.6-any)
secrlinear_1.2.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
secrlinear/json (API)
| # Install 'secrlinear' in R: |
| install.packages('secrlinear', repos = c('https://murrayefford.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/murrayefford/secrlinear/issues
Last updated from:b0b331ebdc. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 310 | ||
| source / vignettes | OK | 300 | ||
| linux-release-x86_64 | OK | 336 | ||
| macos-release-arm64 | OK | 181 | ||
| macos-oldrel-arm64 | OK | 174 | ||
| windows-devel | OK | 253 | ||
| windows-release | OK | 257 | ||
| windows-oldrel | OK | 253 | ||
| wasm-release | OK | 183 |
Exports:addedgesasgraphbranchedcheckmovescleanskipsclipmaskdeleteedgesgetLineIDlinearkdmake.linemake.sldfnetworkdistanceread.linearmaskreplotshowedgesshowpathsim.linearpopnsnapPointsToLinearMask
Dependencies:abindBHclassclassIntclicpp11DBIe1071glueigraphKernSmoothlatticelifecyclemagrittrMASSMatrixmgcvmvtnormnlmepkgconfigproxyrasterRcppRcppEigenRcppNumericalRcppParallelrlangs2secrsecrfuncsfspstringistringrterraunitsvctrswk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Spatially Explicit Capture-Recapture for Linear Habitats | secrlinear-package secrlinear |
| Water Vole Capture Dataset | arvicola |
| Check Movements | checkmoves |
| Drop Points Distant From Detectors | clipmask |
| Interactive Edge Edit | addedges cleanskips deleteedges edges replot showedges |
| Linear Mask for Water Vole Dataset | glymemask |
| Kernel Density on Linear Network | linearkd |
| Description of Linear Mask Objects | linearmask |
| Description of Linear Population Objects | linearpopn |
| Linear Detector Array | make.line |
| Network Distances | networkdistance |
| Plot Methods for linearmask and linearpopn objects | plot.linearmask plot.linearpopn |
| Combine linearmask Objects | rbind.linearmask |
| Import Linear Habitat Mask | read.linearmask |
| Display Shortest Path | showpath |
| Silverstream River Centrelines | Silverstream |
| Simulate Animals on Lines | sim.linearpopn |
| Select Part of linearmask Object | subset.linearmask |
| Utility Functions | asgraph branched getLineID make.sldf snapPointsToLinearMask |
