Package: secrdesign 2.9.3
secrdesign: Sampling Design for Spatially Explicit Capture-Recapture
Tools for designing spatially explicit capture-recapture studies of animal populations. This is primarily a simulation manager for package 'secr'. Extensions in version 2.5.0 include costing and evaluation of detector spacing.
Authors:
secrdesign_2.9.3.tar.gz
secrdesign_2.9.3.zip(r-4.5)secrdesign_2.9.3.zip(r-4.4)secrdesign_2.9.3.zip(r-4.3)
secrdesign_2.9.3.tgz(r-4.4-x86_64)secrdesign_2.9.3.tgz(r-4.4-arm64)secrdesign_2.9.3.tgz(r-4.3-x86_64)secrdesign_2.9.3.tgz(r-4.3-arm64)
secrdesign_2.9.3.tar.gz(r-4.5-noble)secrdesign_2.9.3.tar.gz(r-4.4-noble)
secrdesign_2.9.3.tgz(r-4.4-emscripten)secrdesign_2.9.3.tgz(r-4.3-emscripten)
secrdesign.pdf |secrdesign.html✨
secrdesign/json (API)
NEWS
| # Install 'secrdesign' in R: |
| install.packages('secrdesign', repos = c('https://murrayefford.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/murrayefford/secrdesign/issues
Last updated 2 months agofrom:5cf9d0c010. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 28 2024 |
| R-4.5-win-x86_64 | OK | Oct 28 2024 |
| R-4.5-linux-x86_64 | OK | Oct 28 2024 |
| R-4.4-win-x86_64 | OK | Oct 28 2024 |
| R-4.4-mac-x86_64 | OK | Oct 28 2024 |
| R-4.4-mac-aarch64 | OK | Oct 28 2024 |
| R-4.3-win-x86_64 | OK | Oct 28 2024 |
| R-4.3-mac-x86_64 | OK | Oct 28 2024 |
| R-4.3-mac-aarch64 | OK | Oct 28 2024 |
Exports:compactSamplecostingcountEn2EnrmestimateArrayestimateSummaryexpand.argfind.paramfind.statsfit.modelsGAoptimGApenfngetdetectparheaderLambdamake.arraymake.scenariosminnrRSEminsimRSEoptimalSpacingoutputtype<-Qpmrun.scenariossaturationscenariosFromStatisticsscenarioSummaryselect.statstransformOutputvalidate
Dependencies:abindBHbigmemorybigmemory.sriclassclassIntcliDBIe1071glueKernSmoothkofnGAlatticelifecyclemagrittrMASSMatrixmgcvmvtnormnlmeproxyrasterRcppRcppArmadilloRcppEigenRcppNumericalRcppParallelrlangs2secrsfspstringistringrterraunitsuuidvctrswk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Spatially Explicit Capture-Recapture Study Design | secrdesign-package secrdesign |
| Cost of SECR design | costing |
| Extract Summaries | coef.summary count count.summary predict.summary |
| Direct summary of estimate tables | estimateArray estimateSummary |
| Expand Argument List | expand.arg |
| SECR detector placement by maximisation of a simple criterion | GAoptim |
| Ballpark Detection Parameters | getdetectpar |
| Internal Functions | compactSample GApenfn outputtype outputtype<- |
| Expected Detections | En2 Enrm Lambda minnrRSE Qpm |
| Re-cast Simulated Statistical Output as Array | make.array |
| Construct Scenario Data Frame | make.scenarios |
| Optimal Spacing by Simulation | minsimRSE minsimRSE.optimalSpacing |
| Optimal Detector Spacing | optimalSpacing |
| Plot and print methods for optimalSpacing object | plot.optimalSpacing print.optimalSpacing |
| Extract Estimates From Fitted Models | coef coef.fittedmodels derived derived.fittedmodels predict predict.fittedmodels region.N region.N.fittedmodels |
| Combine Simulation Output | c.estimatetables c.selectedstatistics rbind.estimatetables rbind.selectedstatistics |
| Simulate Sampling Designs | fit.models run.scenarios |
| Detector saturation | saturation |
| Make Scenarios to Match Capture Statistics | scenariosFromStatistics |
| Summary of Scenarios | scenarioSummary |
| Select Statistics to Summarize | find.param find.stats select.stats |
| Generic Methods for secrdesign Objects | header plot.selectedstatistics summary.estimatetables summary.rawdata summary.secrdesign summary.selectedstatistics |
| Transform Simulation Output | transformOutput |
| Reject Implausible Statistics | validate |
