Package: secr
Type: Package
Title: Spatially Explicit Capture-Recapture
Version: 5.5.0
Date: 2026-07-02
Description: Functions to estimate the density and size of a spatially
        distributed animal population sampled with an array of passive
        detectors, such as traps, or by searching polygons or
        transects. Models incorporating distance-dependent detection
        are fitted by maximizing the likelihood. Tools are included for
        data manipulation and model selection.
Authors@R: c(person("Murray", "Efford", 
    email = "murray.efford@otago.ac.nz", 
    role = c("aut","cre"), 
    comment = c(ORCID = "0000-0001-5231-5184")),
    person("Philipp", "Jund", 
    role = "ctb",
    comment = "faster transect search and spacing"),
    person("David", "Fletcher",
    role = "ctb",
    comment = "overdispersion"),
    person("Yan Ru", "Choo",
    role = "ctb",
    comment = c(ORCID = "0000-0002-8852-7178", "goodness-of-fit"))
    )
Depends: R (>= 3.5.0), methods
Imports: secrfunc (>= 1.1.2), abind, graphics, grDevices, MASS, mgcv,
        mvtnorm, nlme, parallel, raster (>= 3.5-15), Rcpp (>= 0.12.14),
        RcppParallel (>= 5.1.1), sf, stats, stringr, terra (>= 1.5-12),
        tools, utils
Suggests: gdistance, igraph, knitr, readxl, rmarkdown, sp, spatstat (>=
        3.3-3), spatstat.geom, spatstat.random, spcosa, spsurvey (>=
        5.3.0), testthat
LinkingTo: BH, Rcpp, RcppParallel
VignetteBuilder: knitr
License: GPL (>= 2)
LazyData: yes
KeepSource: yes
LazyDataCompression: xz
SystemRequirements: GNU make
URL: https://www.otago.ac.nz/density/,
        https://github.com/MurrayEfford/secr/
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        make libicu-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev
Repository: https://murrayefford.r-universe.dev
Date/Publication: 2026-07-04 10:30:06 UTC
RemoteUrl: https://github.com/MurrayEfford/secr
RemoteRef: HEAD
RemoteSha: 1723b470379a2d1791958470e5828a2d4e8ac19c
NeedsCompilation: yes
Packaged: 2026-07-04 11:28:17 UTC; root
Author: Murray Efford [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5231-5184>),
  Philipp Jund [ctb] (faster transect search and spacing),
  David Fletcher [ctb] (overdispersion),
  Yan Ru Choo [ctb] (ORCID: <https://orcid.org/0000-0002-8852-7178>,
    goodness-of-fit)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>